docker-batman
2016-06-20 20:15
519 查看
https://hub.docker.com/r/joewandy/docker-batman/
[1] Hao, Jie, et al. "BATMAN—an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model." Bioinformatics 28.15 (2012): 2088-2090
To pull this container (joewandy/docker-batman) from the hub, assign the name 'batman' to the running container and map port 8787 from the container to the host.
Next, to find out the IP address assigned to your virtual machine
Using that IP, run R-Studio from the browser, e.g. http://192.168.99.100:8787. Login using user rstudio, password rstudio. An example script runBatman.R is provided inside /home/rstudio/example. Open that script and run it to test BATMAN on some serum data. The results can be found in the /home/rstudio/example/runBATMAN/BatmanOutput.
To access the shell once the batman container is running
docker-batman
This docker container provides BATMAN [1] running on top of Ubuntu 14.04 and R-Studio, used for the Bayesian analysis of 1D-NMR data. It seems a bit difficult to get BATMAN to compile on the latest OSX version, so I created this container ..[1] Hao, Jie, et al. "BATMAN—an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model." Bioinformatics 28.15 (2012): 2088-2090
To pull this container (joewandy/docker-batman) from the hub, assign the name 'batman' to the running container and map port 8787 from the container to the host.
$ docker run --name batman -dp 8787:8787 joewandy/docker-batman
Next, to find out the IP address assigned to your virtual machine
$ docker-machine ip default
Using that IP, run R-Studio from the browser, e.g. http://192.168.99.100:8787. Login using user rstudio, password rstudio. An example script runBatman.R is provided inside /home/rstudio/example. Open that script and run it to test BATMAN on some serum data. The results can be found in the /home/rstudio/example/runBATMAN/BatmanOutput.
To access the shell once the batman container is running
$ docker exec -it batman /bin/bash
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