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cd "C:\Program Files\MySQL\MySQL Server 5.1\bin"
mysqld -nt --defaults-file="C:\Program Files\MySQL\MySQL Server 5.1\my.ini" --standalone --console

Plugin 'InnoDB' init function returned error.
Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
Unknown/unsupported table type: INNODB
Aborting
Forcing shutdown of 1 plugins

This message is a symptom of the log file size problem (just google InnoDB: Error: log file .\ib_logfile0 is of different size for more information). All you need to do is to clear the following files from the folder C:\ProgramData\MySQL\MySQL Server 5.1\data:

ib_logfile0
ib_logfile1
ibdata1
$YOUR_HOSTNAME$.err

In my case it is Windows Server 2003. The folder path is C:\Documents and Settings\All Users\Application Data\MySQL\MySQL Server 5.1\data