ZOJ Problem Set - 1076 Gene Assembly

ZOJ Problem Set - 1076

Gene Assembly

Time Limit: 2 Seconds
Memory Limit: 65536 KB

Statement of the Problem
With the large amount of genomic DNA sequence data being made available, it is becoming more important to find genes (parts of the genomic DNA which are responsible for the synthesis of proteins) in these sequences. It is known that for eukaryotes
(in contrast to prokaryotes) the process is more complicated, because of the presence of junk DNA that interrupts the coding region of genes in the genomic sequence. That is, a gene is composed by several pieces (called exons) of coding regions. It is
known that the order of the exons is maintained in the protein synthesis process, but the number of exons and their lengths can be arbitrary.

Most gene finding algorithms have two steps: in the first they search for possible exons; in the second they try to assemble a largest possible gene, by finding a chain with the largest possible number of exons. This chain must obey the order in which
the exons appear in the genomic sequence. We say that exon i appears before exon j if the end of i precedes the beginning of j.

The objective of this problem is, given a set of possible exons, to find the chain with the largest possible number of exons that cound be assembled to generate a gene.

Input Format

Several input instances are given. Each instance begins with the number 0 < n < 1000 of possible exons in the sequence. Then, each of the next n lines contains a pair of integer numbers that represent the position in which the exon starts and ends
in the genomic sequence. You can suppose that the genomic sequence has at most 50000 basis. The input ends with a line with a single 0.

Output Format

For each input instance your program should print in one line the chain with the largest possible number of exons, by enumerating the exons in the chain. If there is more than one chain with the same number of exons, your program can print anyone of
them.

Sample Input

6

340 500

220 470

100 300

880 943

525 556

612 776

3

705 773

124 337

453 665

0

Sample Output

3 1 5 6 4

2 3 1

其实用贪心也可以做不过想练练动规就动规好了

AC代码：

#include<iostream>
#include<algorithm>
#include<string.h>
using namespace std;
struct Gene{
int start,end,id;
};
bool cmp(Gene a,Gene b)
{
if(a.start!=b.start)
{
return a.start<b.start;
}
else return a.end<b.end;
}
void print(int *path,Gene*g,int start,int lay)
{
if(start==-1)return;
print(path,g,path[start],lay+1);
cout<<g[start].id;
if(lay!=0)cout<<' ';
else cout<<endl;
}
int main()
{
int n;
while(cin>>n&&n!=0)
{
Gene g[1001];
int path[1001];
int count[1001];
memset(path,-1,sizeof(path));
memset(count,0,sizeof(count));
for(int i=0;i<n;i++)
{
cin>>g[i].start>>g[i].end;
g[i].id=i+1;
}
sort(g,g+n,cmp);
count[0]=1;
for(int i=1;i<n;i++)
{
for(int j=0;j<i;j++)
{
if(g[j].end<g[i].start)
{
if(count[i]<count[j])
{
count[i]=count[j];
path[i]=j;
}
}
}
count[i]++;
}
int max=0;int flag;
for(int i=0;i<n;i++)
if(max<count[i])
{
max=count[i];
flag=i;
}
//cout<<max<<endl;
print(path,g,flag,0);
}
}